G++ -std=gnu++11 -I"/opt/R/3.5.1/lib64/R/include" -DNDEBUG -I././/include -I././/dmlc-core/include -I././/rabit/include -I././ -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c xgboost_R.cc -o xgboost_R.o Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1 none neededĬhecking for backtrace in -lexecinfo. yesĬhecking for gcc option to accept ISO C89. noĬhecking whether we are using the GNU C compiler. a.outĬhecking whether we are cross compiling. yesĬhecking for C compiler default output file name. Installing package into ‘/home/ablack/R/x86_64-pc-linux-gnu-library/3.5’ Warning: invalid gid value replaced by that for user 'nobody' Warning: invalid uid value replaced by that for user 'nobody' Warning: file 'xgboost/configure' did not have execute permissions: corrected Warning: file 'xgboost/cleanup' did not have execute permissions: corrected ─ looking to see if a ‘data/datalist’ file should be added ─ checking for empty or unneeded directories ─ checking for LF line-endings in source and make files and shell scripts Thanks! > install_github("dmlc/xgboost", subdir = "R-package")ĭownloading GitHub repo checking for file ‘/tmp/Rtmp2H0RtM/remotes2dcd7e4a1cf2/dmlc-xgboost-6601a64/R-package/DESCRIPTION’. How do I know if this is a dependency issue on my system or a bug in the package?
I have a hard time troubleshooting compilation errors like the one I'm getting here so any general advice would be great. It looks like the key error is make: *** No rule to make target `././/amalgamation/xgboost-all0.o', needed by `xgboost.so'.
I am trying to install xgboost on RedHat Linux.
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